Hi Thomas,
Currently, the running the daemons as a non-root user would probably cause
it to not worker properly.
Having said that, the jobs themselves are run suid as the owner of the
job in user execution mode, or as the "qubeproxy" user in proxy mode (default),
so the job logs are written as those users as well, not root (unless, of course,
you submit jobs as root in user mode, which is probably not a good idea in
your case).
Does that help?
-shinya.